Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
USP39Q53GS9 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
USP39Q53GS9 AL022342.1-201ENST00000400363 863 ntBASIC18.69■□□□□ 0.58
USP39Q53GS9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.69■□□□□ 0.58
USP39Q53GS9 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.69■□□□□ 0.58
USP39Q53GS9 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.69■□□□□ 0.58
USP39Q53GS9 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.69■□□□□ 0.58
USP39Q53GS9 AP003733.1-201ENST00000491725 852 ntBASIC18.69■□□□□ 0.58
USP39Q53GS9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.69■□□□□ 0.58
USP39Q53GS9 AC104390.1-201ENST00000555663 520 ntBASIC18.69■□□□□ 0.58
USP39Q53GS9 AC010240.3-201ENST00000607688 395 ntBASIC18.69■□□□□ 0.58
USP39Q53GS9 GPALPP1-207ENST00000611650 899 ntBASIC18.69■□□□□ 0.58
USP39Q53GS9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.69■□□□□ 0.58
USP39Q53GS9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.69■□□□□ 0.58
USP39Q53GS9 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.69■□□□□ 0.58
USP39Q53GS9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.69■□□□□ 0.58
USP39Q53GS9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP39Q53GS9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.69■□□□□ 0.58
USP39Q53GS9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.68■□□□□ 0.58
USP39Q53GS9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.68■□□□□ 0.58
USP39Q53GS9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
USP39Q53GS9 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.68■□□□□ 0.58
USP39Q53GS9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 AL662844.1-201ENST00000546340 181 ntBASIC18.68■□□□□ 0.58
USP39Q53GS9 AC005332.3-201ENST00000589904 676 ntBASIC18.68■□□□□ 0.58
USP39Q53GS9 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
USP39Q53GS9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.68■□□□□ 0.58
USP39Q53GS9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.68■□□□□ 0.58
USP39Q53GS9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP39Q53GS9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.68■□□□□ 0.58
USP39Q53GS9 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.68■□□□□ 0.58
USP39Q53GS9 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.68■□□□□ 0.58
USP39Q53GS9 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
USP39Q53GS9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
USP39Q53GS9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.67■□□□□ 0.58
USP39Q53GS9 HOXB1-202ENST00000577092 1414 ntBASIC18.67■□□□□ 0.58
USP39Q53GS9 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.67■□□□□ 0.58
USP39Q53GS9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
USP39Q53GS9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 AC079781.3-201ENST00000449110 356 ntBASIC18.67■□□□□ 0.58
USP39Q53GS9 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.67■□□□□ 0.58
USP39Q53GS9 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.67■□□□□ 0.58
USP39Q53GS9 AC074051.2-201ENST00000565115 352 ntBASIC18.67■□□□□ 0.58
USP39Q53GS9 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.67■□□□□ 0.58
USP39Q53GS9 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USP39Q53GS9 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.67■□□□□ 0.58
USP39Q53GS9 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.67■□□□□ 0.58
USP39Q53GS9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USP39Q53GS9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
USP39Q53GS9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
USP39Q53GS9 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.67■□□□□ 0.58
USP39Q53GS9 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
USP39Q53GS9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USP39Q53GS9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP39Q53GS9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.66■□□□□ 0.58
USP39Q53GS9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
USP39Q53GS9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.66■□□□□ 0.58
USP39Q53GS9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
USP39Q53GS9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP39Q53GS9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms