Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM4Q9Y4Z0 AC018358.1-201ENST00000631079 1402 ntBASIC19.87■□□□□ 0.77
LSM4Q9Y4Z0 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LSM4Q9Y4Z0 AC016575.1-201ENST00000607026 382 ntBASIC19.87■□□□□ 0.77
LSM4Q9Y4Z0 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LSM4Q9Y4Z0 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LSM4Q9Y4Z0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM4Q9Y4Z0 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.87■□□□□ 0.77
LSM4Q9Y4Z0 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM4Q9Y4Z0 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM4Q9Y4Z0 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC19.86■□□□□ 0.77
LSM4Q9Y4Z0 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM4Q9Y4Z0 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
LSM4Q9Y4Z0 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.85■□□□□ 0.77
LSM4Q9Y4Z0 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LSM4Q9Y4Z0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.85■□□□□ 0.77
LSM4Q9Y4Z0 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM4Q9Y4Z0 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.85■□□□□ 0.77
LSM4Q9Y4Z0 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.85■□□□□ 0.77
LSM4Q9Y4Z0 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 CALM3-209ENST00000597743 577 ntTSL 4 BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 LINC01971-201ENST00000617888 1048 ntBASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM4Q9Y4Z0 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM4Q9Y4Z0 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
LSM4Q9Y4Z0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM4Q9Y4Z0 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.83■□□□□ 0.77
LSM4Q9Y4Z0 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM4Q9Y4Z0 DUX4L11-201ENST00000611504 1267 ntBASIC19.83■□□□□ 0.77
LSM4Q9Y4Z0 DUX4L12-201ENST00000614593 1267 ntBASIC19.83■□□□□ 0.77
LSM4Q9Y4Z0 DUX4L14-201ENST00000621227 1267 ntBASIC19.83■□□□□ 0.77
LSM4Q9Y4Z0 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LSM4Q9Y4Z0 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM4Q9Y4Z0 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC19.82■□□□□ 0.76
LSM4Q9Y4Z0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.82■□□□□ 0.76
LSM4Q9Y4Z0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LSM4Q9Y4Z0 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.82■□□□□ 0.76
LSM4Q9Y4Z0 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LSM4Q9Y4Z0 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
LSM4Q9Y4Z0 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
LSM4Q9Y4Z0 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM4Q9Y4Z0 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM4Q9Y4Z0 CR559946.2-201ENST00000623684 991 ntBASIC19.8■□□□□ 0.76
LSM4Q9Y4Z0 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
LSM4Q9Y4Z0 AC145676.1-201ENST00000514988 2004 ntBASIC19.8■□□□□ 0.76
LSM4Q9Y4Z0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM4Q9Y4Z0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM4Q9Y4Z0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.79■□□□□ 0.76
LSM4Q9Y4Z0 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM4Q9Y4Z0 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LSM4Q9Y4Z0 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM4Q9Y4Z0 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM4Q9Y4Z0 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM4Q9Y4Z0 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.78■□□□□ 0.76
LSM4Q9Y4Z0 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.78■□□□□ 0.76
LSM4Q9Y4Z0 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LSM4Q9Y4Z0 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.78■□□□□ 0.76
LSM4Q9Y4Z0 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.78■□□□□ 0.76
LSM4Q9Y4Z0 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LSM4Q9Y4Z0 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.77■□□□□ 0.76
LSM4Q9Y4Z0 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LSM4Q9Y4Z0 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.77■□□□□ 0.76
LSM4Q9Y4Z0 AC135983.2-203ENST00000454486 1613 ntBASIC19.76■□□□□ 0.75
LSM4Q9Y4Z0 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM4Q9Y4Z0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LSM4Q9Y4Z0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.76■□□□□ 0.75
LSM4Q9Y4Z0 HSD17B1P1-201ENST00000590052 955 ntBASIC19.76■□□□□ 0.75
LSM4Q9Y4Z0 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM4Q9Y4Z0 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM4Q9Y4Z0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM4Q9Y4Z0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM4Q9Y4Z0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.75■□□□□ 0.75
LSM4Q9Y4Z0 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM4Q9Y4Z0 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM4Q9Y4Z0 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms