Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC32.13■■■□□ 2.73
USP42Q9H9J4 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
USP42Q9H9J4 REST-210ENST00000638187 1334 ntTSL 5 BASIC32.13■■■□□ 2.73
USP42Q9H9J4 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC32.13■■■□□ 2.73
USP42Q9H9J4 DUX4L18-201ENST00000553347 1267 ntBASIC32.13■■■□□ 2.73
USP42Q9H9J4 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
USP42Q9H9J4 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC32.12■■■□□ 2.73
USP42Q9H9J4 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC32.12■■■□□ 2.73
USP42Q9H9J4 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC32.12■■■□□ 2.73
USP42Q9H9J4 AC133552.2-201ENST00000619106 1032 ntBASIC32.12■■■□□ 2.73
USP42Q9H9J4 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
USP42Q9H9J4 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
USP42Q9H9J4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
USP42Q9H9J4 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC32.11■■■□□ 2.73
USP42Q9H9J4 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC32.11■■■□□ 2.73
USP42Q9H9J4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
USP42Q9H9J4 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
USP42Q9H9J4 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
USP42Q9H9J4 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC32.1■■■□□ 2.73
USP42Q9H9J4 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC32.1■■■□□ 2.73
USP42Q9H9J4 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
USP42Q9H9J4 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
USP42Q9H9J4 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC32.09■■■□□ 2.73
USP42Q9H9J4 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC32.08■■■□□ 2.73
USP42Q9H9J4 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
USP42Q9H9J4 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
USP42Q9H9J4 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC32.08■■■□□ 2.73
USP42Q9H9J4 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC32.08■■■□□ 2.73
USP42Q9H9J4 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC32.07■■■□□ 2.72
USP42Q9H9J4 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
USP42Q9H9J4 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
USP42Q9H9J4 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
USP42Q9H9J4 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
USP42Q9H9J4 AL035685.1-201ENST00000636663 812 ntBASIC32.06■■■□□ 2.72
USP42Q9H9J4 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
USP42Q9H9J4 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
USP42Q9H9J4 AL451085.2-201ENST00000605085 799 ntBASIC32.05■■■□□ 2.72
USP42Q9H9J4 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
USP42Q9H9J4 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP42Q9H9J4 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP42Q9H9J4 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP42Q9H9J4 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC32.04■■■□□ 2.72
USP42Q9H9J4 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP42Q9H9J4 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
USP42Q9H9J4 SMPD5-203ENST00000639008 1464 ntBASIC32.02■■■□□ 2.72
USP42Q9H9J4 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC32.01■■■□□ 2.72
USP42Q9H9J4 AC026202.3-201ENST00000600805 1127 ntBASIC32.01■■■□□ 2.72
USP42Q9H9J4 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC32.01■■■□□ 2.72
USP42Q9H9J4 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC32.01■■■□□ 2.71
USP42Q9H9J4 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC32.01■■■□□ 2.71
USP42Q9H9J4 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
USP42Q9H9J4 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC32■■■□□ 2.71
USP42Q9H9J4 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
USP42Q9H9J4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC32■■■□□ 2.71
USP42Q9H9J4 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC32■■■□□ 2.71
USP42Q9H9J4 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC32■■■□□ 2.71
USP42Q9H9J4 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.99■■■□□ 2.71
USP42Q9H9J4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.99■■■□□ 2.71
USP42Q9H9J4 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
USP42Q9H9J4 ABCB10P3-201ENST00000561950 2166 ntBASIC31.99■■■□□ 2.71
USP42Q9H9J4 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.99■■■□□ 2.71
USP42Q9H9J4 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
USP42Q9H9J4 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
USP42Q9H9J4 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.98■■■□□ 2.71
USP42Q9H9J4 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
USP42Q9H9J4 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
USP42Q9H9J4 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP42Q9H9J4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.97■■■□□ 2.71
USP42Q9H9J4 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.96■■■□□ 2.71
USP42Q9H9J4 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.96■■■□□ 2.71
USP42Q9H9J4 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
USP42Q9H9J4 AC025884.2-201ENST00000553429 711 ntBASIC31.96■■■□□ 2.71
USP42Q9H9J4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.96■■■□□ 2.71
USP42Q9H9J4 AL359258.2-201ENST00000564063 1566 ntBASIC31.95■■■□□ 2.71
USP42Q9H9J4 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.7
USP42Q9H9J4 TRIR-205ENST00000592273 783 ntTSL 3 BASIC31.95■■■□□ 2.7
USP42Q9H9J4 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.95■■■□□ 2.7
USP42Q9H9J4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
USP42Q9H9J4 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC31.95■■■□□ 2.7
USP42Q9H9J4 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
USP42Q9H9J4 DUX4L9-201ENST00000449051 1259 ntBASIC31.93■■■□□ 2.7
USP42Q9H9J4 AP004833.2-201ENST00000532228 1454 ntBASIC31.92■■■□□ 2.7
USP42Q9H9J4 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
USP42Q9H9J4 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.92■■■□□ 2.7
USP42Q9H9J4 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
USP42Q9H9J4 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
USP42Q9H9J4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.92■■■□□ 2.7
USP42Q9H9J4 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
USP42Q9H9J4 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.91■■■□□ 2.7
USP42Q9H9J4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
USP42Q9H9J4 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC31.91■■■□□ 2.7
USP42Q9H9J4 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
USP42Q9H9J4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
USP42Q9H9J4 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.9■■■□□ 2.7
USP42Q9H9J4 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.9■■■□□ 2.7
USP42Q9H9J4 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.9■■■□□ 2.7
USP42Q9H9J4 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
USP42Q9H9J4 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP42Q9H9J4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.89■■■□□ 2.7
USP42Q9H9J4 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 577 ms