Protein–RNA interactions for Protein: Q8WV60

PTCD2, Pentatricopeptide repeat-containing protein 2, mitochondrial, humanhuman

Known RBP Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2Q8WV60 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD2Q8WV60 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD2Q8WV60 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
PTCD2Q8WV60 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD2Q8WV60 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD2Q8WV60 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.24■■□□□ 1.63
PTCD2Q8WV60 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
PTCD2Q8WV60 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.23■■□□□ 1.63
PTCD2Q8WV60 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD2Q8WV60 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.23■■□□□ 1.63
PTCD2Q8WV60 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PTCD2Q8WV60 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.22■■□□□ 1.63
PTCD2Q8WV60 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
PTCD2Q8WV60 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PTCD2Q8WV60 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PTCD2Q8WV60 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
PTCD2Q8WV60 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD2Q8WV60 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD2Q8WV60 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.2■■□□□ 1.62
PTCD2Q8WV60 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PTCD2Q8WV60 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.19■■□□□ 1.62
PTCD2Q8WV60 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD2Q8WV60 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.19■■□□□ 1.62
PTCD2Q8WV60 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.19■■□□□ 1.62
PTCD2Q8WV60 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD2Q8WV60 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD2Q8WV60 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD2Q8WV60 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.18■■□□□ 1.62
PTCD2Q8WV60 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD2Q8WV60 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD2Q8WV60 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.18■■□□□ 1.62
PTCD2Q8WV60 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.18■■□□□ 1.62
PTCD2Q8WV60 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.18■■□□□ 1.62
PTCD2Q8WV60 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD2Q8WV60 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD2Q8WV60 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD2Q8WV60 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
PTCD2Q8WV60 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.17■■□□□ 1.62
PTCD2Q8WV60 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.16■■□□□ 1.62
PTCD2Q8WV60 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.16■■□□□ 1.62
PTCD2Q8WV60 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.15■■□□□ 1.62
PTCD2Q8WV60 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCD2Q8WV60 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD2Q8WV60 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD2Q8WV60 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.14■■□□□ 1.62
PTCD2Q8WV60 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
PTCD2Q8WV60 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.62
PTCD2Q8WV60 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD2Q8WV60 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD2Q8WV60 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PTCD2Q8WV60 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
PTCD2Q8WV60 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.14■■□□□ 1.61
PTCD2Q8WV60 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PTCD2Q8WV60 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PTCD2Q8WV60 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PTCD2Q8WV60 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.13■■□□□ 1.61
PTCD2Q8WV60 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTCD2Q8WV60 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PTCD2Q8WV60 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
PTCD2Q8WV60 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
PTCD2Q8WV60 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
PTCD2Q8WV60 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.12■■□□□ 1.61
PTCD2Q8WV60 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.12■■□□□ 1.61
PTCD2Q8WV60 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC25.11■■□□□ 1.61
PTCD2Q8WV60 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PTCD2Q8WV60 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
PTCD2Q8WV60 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.1■■□□□ 1.61
PTCD2Q8WV60 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.1■■□□□ 1.61
PTCD2Q8WV60 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
PTCD2Q8WV60 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.1■■□□□ 1.61
PTCD2Q8WV60 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTCD2Q8WV60 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PTCD2Q8WV60 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
PTCD2Q8WV60 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTCD2Q8WV60 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.08■■□□□ 1.61
PTCD2Q8WV60 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PTCD2Q8WV60 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PTCD2Q8WV60 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.08■■□□□ 1.61
PTCD2Q8WV60 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
PTCD2Q8WV60 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD2Q8WV60 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms