Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC26.49■■□□□ 1.83
VCANP13611 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
VCANP13611 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
VCANP13611 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
VCANP13611 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
VCANP13611 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
VCANP13611 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
VCANP13611 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC26.47■■□□□ 1.83
VCANP13611 AC104564.3-201ENST00000582367 638 ntBASIC26.47■■□□□ 1.83
VCANP13611 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
VCANP13611 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
VCANP13611 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
VCANP13611 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.46■■□□□ 1.83
VCANP13611 AC005837.3-201ENST00000612163 286 ntBASIC26.46■■□□□ 1.83
VCANP13611 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
VCANP13611 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.46■■□□□ 1.83
VCANP13611 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC26.46■■□□□ 1.83
VCANP13611 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.46■■□□□ 1.83
VCANP13611 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
VCANP13611 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
VCANP13611 AC026271.2-201ENST00000428091 497 ntBASIC26.45■■□□□ 1.83
VCANP13611 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
VCANP13611 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.45■■□□□ 1.82
VCANP13611 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.45■■□□□ 1.82
VCANP13611 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.45■■□□□ 1.82
VCANP13611 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
VCANP13611 AC139795.1-202ENST00000500444 432 ntBASIC26.44■■□□□ 1.82
VCANP13611 RAP2CP1-202ENST00000605179 643 ntBASIC26.44■■□□□ 1.82
VCANP13611 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
VCANP13611 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
VCANP13611 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
VCANP13611 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.43■■□□□ 1.82
VCANP13611 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.43■■□□□ 1.82
VCANP13611 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.42■■□□□ 1.82
VCANP13611 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.41■■□□□ 1.82
VCANP13611 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC26.41■■□□□ 1.82
VCANP13611 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
VCANP13611 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
VCANP13611 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
VCANP13611 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
VCANP13611 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
VCANP13611 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC26.4■■□□□ 1.82
VCANP13611 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC26.4■■□□□ 1.82
VCANP13611 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
VCANP13611 AC120057.4-201ENST00000624722 1615 ntBASIC26.39■■□□□ 1.82
VCANP13611 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
VCANP13611 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
VCANP13611 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.39■■□□□ 1.81
VCANP13611 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC26.38■■□□□ 1.81
VCANP13611 AC126177.7-201ENST00000547904 679 ntBASIC26.38■■□□□ 1.81
VCANP13611 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.38■■□□□ 1.81
VCANP13611 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.38■■□□□ 1.81
VCANP13611 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
VCANP13611 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.38■■□□□ 1.81
VCANP13611 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
VCANP13611 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.37■■□□□ 1.81
VCANP13611 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
VCANP13611 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
VCANP13611 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.37■■□□□ 1.81
VCANP13611 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
VCANP13611 AC110285.6-201ENST00000617652 491 ntBASIC26.37■■□□□ 1.81
VCANP13611 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.36■■□□□ 1.81
VCANP13611 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
VCANP13611 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
VCANP13611 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
VCANP13611 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.36■■□□□ 1.81
VCANP13611 ZNRF2P3-201ENST00000424200 374 ntBASIC26.36■■□□□ 1.81
VCANP13611 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
VCANP13611 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.36■■□□□ 1.81
VCANP13611 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.35■■□□□ 1.81
VCANP13611 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
VCANP13611 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.35■■□□□ 1.81
VCANP13611 MIR5787-201ENST00000611784 55 ntBASIC26.35■■□□□ 1.81
VCANP13611 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
VCANP13611 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.35■■□□□ 1.81
VCANP13611 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
VCANP13611 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
VCANP13611 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
VCANP13611 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
VCANP13611 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
VCANP13611 AC131281.2-201ENST00000520478 145 ntBASIC26.33■■□□□ 1.81
VCANP13611 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.32■■□□□ 1.8
VCANP13611 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
VCANP13611 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
VCANP13611 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
VCANP13611 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.32■■□□□ 1.8
VCANP13611 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.31■■□□□ 1.8
VCANP13611 AL161658.1-201ENST00000623641 1967 ntBASIC26.31■■□□□ 1.8
VCANP13611 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.3■■□□□ 1.8
VCANP13611 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
VCANP13611 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.29■■□□□ 1.8
VCANP13611 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.29■■□□□ 1.8
VCANP13611 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VCANP13611 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
VCANP13611 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.28■■□□□ 1.8
VCANP13611 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
VCANP13611 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.27■■□□□ 1.8
VCANP13611 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.27■■□□□ 1.8
VCANP13611 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.26■■□□□ 1.79
VCANP13611 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms