Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
RTN3O95197 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
RTN3O95197 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.32■■□□□ 1.8
RTN3O95197 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTN3O95197 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RTN3O95197 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RTN3O95197 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTN3O95197 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC26.31■■□□□ 1.8
RTN3O95197 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.31■■□□□ 1.8
RTN3O95197 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTN3O95197 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTN3O95197 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RTN3O95197 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RTN3O95197 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RTN3O95197 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RTN3O95197 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
RTN3O95197 AC135731.1-201ENST00000569415 2548 ntBASIC26.29■■□□□ 1.8
RTN3O95197 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RTN3O95197 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RTN3O95197 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.29■■□□□ 1.8
RTN3O95197 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
RTN3O95197 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RTN3O95197 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RTN3O95197 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
RTN3O95197 AC092296.2-201ENST00000589470 999 ntBASIC26.27■■□□□ 1.8
RTN3O95197 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RTN3O95197 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RTN3O95197 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
RTN3O95197 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RTN3O95197 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.25■■□□□ 1.79
RTN3O95197 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.25■■□□□ 1.79
RTN3O95197 DRD5P2-201ENST00000421395 2012 ntBASIC26.25■■□□□ 1.79
RTN3O95197 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
RTN3O95197 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RTN3O95197 AL359258.2-201ENST00000564063 1566 ntBASIC26.24■■□□□ 1.79
RTN3O95197 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RTN3O95197 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
RTN3O95197 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.23■■□□□ 1.79
RTN3O95197 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RTN3O95197 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RTN3O95197 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
RTN3O95197 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
RTN3O95197 ECEL1P2-201ENST00000461596 1295 ntBASIC26.22■■□□□ 1.79
RTN3O95197 ABHD17AP5-201ENST00000580133 923 ntBASIC26.22■■□□□ 1.79
RTN3O95197 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.22■■□□□ 1.79
RTN3O95197 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RTN3O95197 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RTN3O95197 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RTN3O95197 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.21■■□□□ 1.79
RTN3O95197 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RTN3O95197 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
RTN3O95197 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RTN3O95197 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RTN3O95197 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RTN3O95197 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RTN3O95197 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.21■■□□□ 1.79
RTN3O95197 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.2■■□□□ 1.78
RTN3O95197 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RTN3O95197 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
RTN3O95197 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
RTN3O95197 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.18■■□□□ 1.78
RTN3O95197 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RTN3O95197 AL157400.5-201ENST00000507624 621 ntBASIC26.17■■□□□ 1.78
RTN3O95197 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.17■■□□□ 1.78
RTN3O95197 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
RTN3O95197 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.16■■□□□ 1.78
RTN3O95197 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RTN3O95197 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
RTN3O95197 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
RTN3O95197 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.15■■□□□ 1.78
RTN3O95197 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.15■■□□□ 1.78
RTN3O95197 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
RTN3O95197 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.14■■□□□ 1.78
RTN3O95197 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
RTN3O95197 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
RTN3O95197 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
RTN3O95197 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.13■■□□□ 1.77
RTN3O95197 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RTN3O95197 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RTN3O95197 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
RTN3O95197 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RTN3O95197 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RTN3O95197 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.12■■□□□ 1.77
RTN3O95197 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.11■■□□□ 1.77
RTN3O95197 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
RTN3O95197 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.1■■□□□ 1.77
RTN3O95197 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC26.1■■□□□ 1.77
RTN3O95197 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.1■■□□□ 1.77
RTN3O95197 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
RTN3O95197 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
RTN3O95197 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
RTN3O95197 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
RTN3O95197 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.76
RTN3O95197 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
RTN3O95197 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.07■■□□□ 1.76
RTN3O95197 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
RTN3O95197 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
RTN3O95197 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
RTN3O95197 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.07■■□□□ 1.76
RTN3O95197 WHAMMP3-201ENST00000611636 1609 ntBASIC26.06■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms