Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 KRT18P56-201ENST00000507275 550 ntBASIC21.19■□□□□ 0.98
DDX41Q9UJV9 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 AC093458.2-201ENST00000623150 629 ntBASIC21.19■□□□□ 0.98
DDX41Q9UJV9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX41Q9UJV9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 AC034232.1-201ENST00000506026 1064 ntBASIC21.18■□□□□ 0.98
DDX41Q9UJV9 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX41Q9UJV9 AL512353.2-201ENST00000448759 1962 ntBASIC21.17■□□□□ 0.98
DDX41Q9UJV9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 SEC1P-202ENST00000473944 940 ntBASIC21.17■□□□□ 0.98
DDX41Q9UJV9 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX41Q9UJV9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 FEM1AP3-201ENST00000403722 1741 ntBASIC21.16■□□□□ 0.98
DDX41Q9UJV9 AL109659.2-201ENST00000606809 1674 ntBASIC21.16■□□□□ 0.98
DDX41Q9UJV9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 AC069148.1-201ENST00000608741 768 ntBASIC21.16■□□□□ 0.98
DDX41Q9UJV9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX41Q9UJV9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms