Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CXCL1P09341 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CXCL1P09341 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL1P09341 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL1P09341 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL1P09341 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL1P09341 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CXCL1P09341 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
CXCL1P09341 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC14.33□□□□□ -0.12
CXCL1P09341 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC14.33□□□□□ -0.12
CXCL1P09341 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 SP2-202ENST00000613139 908 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.33□□□□□ -0.12
CXCL1P09341 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CXCL1P09341 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.33□□□□□ -0.12
CXCL1P09341 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CXCL1P09341 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.33□□□□□ -0.12
CXCL1P09341 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.33□□□□□ -0.12
CXCL1P09341 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.33□□□□□ -0.12
CXCL1P09341 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.33□□□□□ -0.12
CXCL1P09341 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL1P09341 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CXCL1P09341 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.32□□□□□ -0.12
CXCL1P09341 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 AC093677.2-201ENST00000600169 1863 ntBASIC14.32□□□□□ -0.12
CXCL1P09341 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL1P09341 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC14.32□□□□□ -0.12
CXCL1P09341 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL1P09341 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL1P09341 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CXCL1P09341 AC005837.3-201ENST00000612163 286 ntBASIC14.32□□□□□ -0.12
CXCL1P09341 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.32□□□□□ -0.12
CXCL1P09341 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL1P09341 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
CXCL1P09341 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC14.32□□□□□ -0.12
CXCL1P09341 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CXCL1P09341 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CXCL1P09341 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL1P09341 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CXCL1P09341 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CXCL1P09341 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.31□□□□□ -0.12
CXCL1P09341 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 SDHAP1-207ENST00000440850 2000 ntBASIC14.31□□□□□ -0.12
CXCL1P09341 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL1P09341 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL1P09341 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC14.31□□□□□ -0.12
CXCL1P09341 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms