Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC8.2□□□□□ -1.1
USH2AO75445 NAA60-208ENST00000570819 833 ntTSL 2 BASIC8.2□□□□□ -1.1
USH2AO75445 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC8.2□□□□□ -1.1
USH2AO75445 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC8.2□□□□□ -1.1
USH2AO75445 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC8.2□□□□□ -1.1
USH2AO75445 KRT8P7-201ENST00000533003 1432 ntBASIC8.2□□□□□ -1.1
USH2AO75445 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
USH2AO75445 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC8.2□□□□□ -1.1
USH2AO75445 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC8.2□□□□□ -1.1
USH2AO75445 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC8.2□□□□□ -1.1
USH2AO75445 AL357033.4-201ENST00000617703 1807 ntBASIC8.19□□□□□ -1.1
USH2AO75445 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC8.19□□□□□ -1.1
USH2AO75445 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
USH2AO75445 AC006333.2-201ENST00000607957 2099 ntBASIC8.19□□□□□ -1.1
USH2AO75445 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC8.19□□□□□ -1.1
USH2AO75445 VN2R19P-201ENST00000442399 1052 ntBASIC8.19□□□□□ -1.1
USH2AO75445 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 MAL2-202ENST00000531508 892 ntTSL 3 BASIC8.19□□□□□ -1.1
USH2AO75445 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC8.19□□□□□ -1.1
USH2AO75445 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
USH2AO75445 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC8.19□□□□□ -1.1
USH2AO75445 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
USH2AO75445 AC008735.5-201ENST00000623544 497 ntBASIC8.19□□□□□ -1.1
USH2AO75445 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC8.19□□□□□ -1.1
USH2AO75445 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC8.19□□□□□ -1.1
USH2AO75445 LINC01521-201ENST00000504184 1943 ntBASIC8.19□□□□□ -1.1
USH2AO75445 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
USH2AO75445 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC8.19□□□□□ -1.1
USH2AO75445 AP002414.1-201ENST00000391405 1147 ntBASIC8.19□□□□□ -1.1
USH2AO75445 HCG4B-203ENST00000450128 991 ntBASIC8.19□□□□□ -1.1
USH2AO75445 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 CITED2-204ENST00000618718 901 ntTSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC8.19□□□□□ -1.1
USH2AO75445 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 RCC2P3-201ENST00000418112 1537 ntBASIC8.19□□□□□ -1.1
USH2AO75445 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC8.19□□□□□ -1.1
USH2AO75445 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC8.19□□□□□ -1.1
USH2AO75445 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 AL109659.2-201ENST00000606809 1674 ntBASIC8.19□□□□□ -1.1
USH2AO75445 LAGE3P1-201ENST00000425356 484 ntBASIC8.19□□□□□ -1.1
USH2AO75445 SLC25A6P5-201ENST00000435663 894 ntBASIC8.19□□□□□ -1.1
USH2AO75445 BX005266.1-201ENST00000473402 457 ntBASIC8.19□□□□□ -1.1
USH2AO75445 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC8.19□□□□□ -1.1
USH2AO75445 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC8.19□□□□□ -1.1
USH2AO75445 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 NME2P1-201ENST00000426182 414 ntBASIC8.19□□□□□ -1.1
USH2AO75445 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC8.19□□□□□ -1.1
USH2AO75445 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC8.19□□□□□ -1.1
USH2AO75445 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
USH2AO75445 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
USH2AO75445 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
USH2AO75445 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC8.18□□□□□ -1.1
USH2AO75445 MTDHP4-201ENST00000600287 670 ntBASIC8.18□□□□□ -1.1
USH2AO75445 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
USH2AO75445 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC8.18□□□□□ -1.1
USH2AO75445 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
USH2AO75445 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
USH2AO75445 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC8.18□□□□□ -1.1
USH2AO75445 AC133561.1-201ENST00000568600 2415 ntBASIC8.18□□□□□ -1.1
USH2AO75445 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC8.18□□□□□ -1.1
USH2AO75445 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
USH2AO75445 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC8.18□□□□□ -1.1
USH2AO75445 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
USH2AO75445 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
USH2AO75445 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
USH2AO75445 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC8.18□□□□□ -1.1
USH2AO75445 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
USH2AO75445 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC8.18□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms