Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 CRYGFP-201ENST00000418459 633 ntBASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 Z99916.2-201ENST00000604037 246 ntBASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 HTR7P1-202ENST00000624664 4411 ntBASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
HIF3AQ9Y2N7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
HIF3AQ9Y2N7 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 AC135776.1-201ENST00000319817 2481 ntBASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 AP003071.4-201ENST00000562276 1284 ntBASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 MIR3180-5-201ENST00000583743 153 ntBASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HIF3AQ9Y2N7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HIF3AQ9Y2N7 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms