Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 LETM1P2-201ENST00000597330 2178 ntBASIC13.88□□□□□ -0.19
LINC00477Q96M19 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 ENSA-205ENST00000361532 792 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 IRX5-204ENST00000560154 879 ntTSL 5 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 MIR6786-201ENST00000616843 113 ntBASIC13.87□□□□□ -0.19
LINC00477Q96M19 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
LINC00477Q96M19 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00477Q96M19 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 AC026471.1-201ENST00000564629 3026 ntBASIC13.86□□□□□ -0.19
LINC00477Q96M19 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 SLC25A6P5-201ENST00000435663 894 ntBASIC13.86□□□□□ -0.19
LINC00477Q96M19 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 RPS15-203ENST00000586096 570 ntTSL 2 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 AL135905.2-201ENST00000584934 1404 ntBASIC13.86□□□□□ -0.19
LINC00477Q96M19 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC13.86□□□□□ -0.19
LINC00477Q96M19 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00477Q96M19 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms