Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 LTB4R2-202ENST00000528054 3092 ntBASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 TPM4P1-201ENST00000436100 807 ntBASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC144BQ3MJ40 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC144BQ3MJ40 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 HBZP1-201ENST00000354915 429 ntBASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC144BQ3MJ40 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 SDHAP1-207ENST00000440850 2000 ntBASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 BICD1-207ENST00000551848 1962 ntBASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC144BQ3MJ40 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms