Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SCN4AP35499 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SCN4AP35499 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
SCN4AP35499 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SCN4AP35499 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC21.79■■□□□ 1.08
SCN4AP35499 HLA-J-203ENST00000494367 1087 ntBASIC21.79■■□□□ 1.08
SCN4AP35499 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.79■■□□□ 1.08
SCN4AP35499 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.79■■□□□ 1.08
SCN4AP35499 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SCN4AP35499 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC21.79■■□□□ 1.08
SCN4AP35499 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SCN4AP35499 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SCN4AP35499 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.78■■□□□ 1.08
SCN4AP35499 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 SYS1-203ENST00000414310 795 ntTSL 3 BASIC21.78■■□□□ 1.08
SCN4AP35499 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC21.78■■□□□ 1.08
SCN4AP35499 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC21.78■■□□□ 1.08
SCN4AP35499 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.78■■□□□ 1.08
SCN4AP35499 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.78■■□□□ 1.08
SCN4AP35499 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 GABARAPL3-202ENST00000624044 1851 ntBASIC21.78■■□□□ 1.08
SCN4AP35499 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC21.78■■□□□ 1.08
SCN4AP35499 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC21.78■■□□□ 1.08
SCN4AP35499 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 AC008687.5-201ENST00000593746 558 ntBASIC21.78■■□□□ 1.08
SCN4AP35499 PGM5P2-202ENST00000637225 1043 ntBASIC21.78■■□□□ 1.08
SCN4AP35499 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN4AP35499 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC21.77■■□□□ 1.08
SCN4AP35499 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC21.77■■□□□ 1.08
SCN4AP35499 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.77■■□□□ 1.08
SCN4AP35499 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
SCN4AP35499 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SCN4AP35499 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 MIR770-201ENST00000390219 98 ntBASIC21.77■■□□□ 1.08
SCN4AP35499 AC073621.1-201ENST00000392730 636 ntBASIC21.77■■□□□ 1.08
SCN4AP35499 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC21.77■■□□□ 1.08
SCN4AP35499 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
SCN4AP35499 SNHG9-202ENST00000564014 471 ntBASIC21.77■■□□□ 1.08
SCN4AP35499 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SCN4AP35499 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC21.77■■□□□ 1.08
SCN4AP35499 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.77■■□□□ 1.08
SCN4AP35499 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.77■■□□□ 1.08
SCN4AP35499 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN4AP35499 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.77■■□□□ 1.07
SCN4AP35499 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.77■■□□□ 1.07
SCN4AP35499 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SCN4AP35499 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
SCN4AP35499 MTMR9LP-203ENST00000426597 1545 ntBASIC21.76■■□□□ 1.07
SCN4AP35499 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 MKNK2P1-201ENST00000437526 628 ntBASIC21.76■■□□□ 1.07
SCN4AP35499 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 TCAP-202ENST00000578283 583 ntTSL 5 BASIC21.76■■□□□ 1.07
SCN4AP35499 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.76■■□□□ 1.07
SCN4AP35499 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 ATP6V0CP3-201ENST00000417255 467 ntBASIC21.76■■□□□ 1.07
SCN4AP35499 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN4AP35499 LHX6-205ENST00000464484 666 ntTSL 2 BASIC21.76■■□□□ 1.07
SCN4AP35499 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC21.76■■□□□ 1.07
SCN4AP35499 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC21.76■■□□□ 1.07
SCN4AP35499 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
SCN4AP35499 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.75■■□□□ 1.07
SCN4AP35499 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SCN4AP35499 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 AC079776.2-201ENST00000641154 1609 ntBASIC21.75■■□□□ 1.07
SCN4AP35499 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.75■■□□□ 1.07
SCN4AP35499 FEM1AP3-201ENST00000403722 1741 ntBASIC21.75■■□□□ 1.07
SCN4AP35499 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.75■■□□□ 1.07
SCN4AP35499 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN4AP35499 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.75■■□□□ 1.07
SCN4AP35499 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC21.75■■□□□ 1.07
SCN4AP35499 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms