Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN4P29074 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN4P29074 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN4P29074 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
PTPN4P29074 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN4P29074 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.56■□□□□ 0.56
PTPN4P29074 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN4P29074 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PTPN4P29074 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PTPN4P29074 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.56■□□□□ 0.56
PTPN4P29074 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN4P29074 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN4P29074 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.55■□□□□ 0.56
PTPN4P29074 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
PTPN4P29074 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.55■□□□□ 0.56
PTPN4P29074 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.55■□□□□ 0.56
PTPN4P29074 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.55■□□□□ 0.56
PTPN4P29074 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.55■□□□□ 0.56
PTPN4P29074 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.55■□□□□ 0.56
PTPN4P29074 AP000525.1-201ENST00000608286 694 ntBASIC18.55■□□□□ 0.56
PTPN4P29074 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.55■□□□□ 0.56
PTPN4P29074 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PTPN4P29074 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN4P29074 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.54■□□□□ 0.56
PTPN4P29074 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.54■□□□□ 0.56
PTPN4P29074 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
PTPN4P29074 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.54■□□□□ 0.56
PTPN4P29074 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.54■□□□□ 0.56
PTPN4P29074 AC116562.2-201ENST00000507042 360 ntBASIC18.54■□□□□ 0.56
PTPN4P29074 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.54■□□□□ 0.56
PTPN4P29074 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN4P29074 AC106820.2-201ENST00000563775 3264 ntBASIC18.54■□□□□ 0.56
PTPN4P29074 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.54■□□□□ 0.56
PTPN4P29074 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 GNAS-203ENST00000306120 1878 ntBASIC18.54■□□□□ 0.56
PTPN4P29074 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN4P29074 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
PTPN4P29074 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PTPN4P29074 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PTPN4P29074 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
PTPN4P29074 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN4P29074 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 MIR1238-201ENST00000408483 83 ntBASIC18.53■□□□□ 0.56
PTPN4P29074 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN4P29074 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN4P29074 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.53■□□□□ 0.56
PTPN4P29074 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.53■□□□□ 0.56
PTPN4P29074 AC145285.6-201ENST00000604632 637 ntBASIC18.53■□□□□ 0.56
PTPN4P29074 MIR6786-201ENST00000616843 113 ntBASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms