Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX4Q9NQI0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 AKR1C7P-201ENST00000305623 895 ntBASIC21.8■■□□□ 1.08
DDX4Q9NQI0 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 AP000347.1-202ENST00000435868 847 ntBASIC21.8■■□□□ 1.08
DDX4Q9NQI0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 KRT16P4-201ENST00000453883 522 ntBASIC21.8■■□□□ 1.08
DDX4Q9NQI0 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX4Q9NQI0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 AC009102.3-201ENST00000623118 1491 ntBASIC21.79■■□□□ 1.08
DDX4Q9NQI0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX4Q9NQI0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 AL353801.3-201ENST00000609898 542 ntBASIC21.78■■□□□ 1.08
DDX4Q9NQI0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.78■■□□□ 1.08
DDX4Q9NQI0 AL024508.2-201ENST00000607749 1894 ntBASIC21.77■■□□□ 1.08
DDX4Q9NQI0 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DDX4Q9NQI0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.77■■□□□ 1.08
DDX4Q9NQI0 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms