Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 AL358472.4-201ENST00000633140 710 ntBASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 AL138781.2-201ENST00000617896 1843 ntBASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ECHDC3Q96DC8 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 AC087289.5-201ENST00000586076 3175 ntBASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 AC073592.3-201ENST00000625118 1834 ntBASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 PCED1CP-201ENST00000419887 785 ntBASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 AC126763.1-201ENST00000552015 2118 ntBASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
ECHDC3Q96DC8 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 AL645929.1-201ENST00000420084 975 ntBASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 AP000550.4-202ENST00000639755 178 ntBASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 AL162741.1-201ENST00000565563 1558 ntBASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ECHDC3Q96DC8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
ECHDC3Q96DC8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 AC091076.1-201ENST00000610741 619 ntBASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 KRT89P-201ENST00000620027 1478 ntBASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ECHDC3Q96DC8 AC005082.1-201ENST00000413042 2259 ntBASIC18.44■□□□□ 0.54
ECHDC3Q96DC8 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.44■□□□□ 0.54
ECHDC3Q96DC8 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ECHDC3Q96DC8 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ECHDC3Q96DC8 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ECHDC3Q96DC8 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.44■□□□□ 0.54
ECHDC3Q96DC8 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms