Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.76■□□□□ 0.43
PPP4R4Q6NUP7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 AC009053.2-201ENST00000563701 2365 ntBASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 AP006294.2-201ENST00000641667 209 ntBASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PPP4R4Q6NUP7 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 GNAS-203ENST00000306120 1878 ntBASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 AC093827.2-201ENST00000512654 315 ntBASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 AC066615.1-201ENST00000640911 628 ntBASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
PPP4R4Q6NUP7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms