Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.12■□□□□ 0.33
CPSF4LA6NMK7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 FAM197Y1-201ENST00000421178 764 ntBASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 KRT8P45-201ENST00000414328 1447 ntBASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CPSF4LA6NMK7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 KRT18P29-201ENST00000397031 1267 ntBASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 AL162741.1-201ENST00000565563 1558 ntBASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.1■□□□□ 0.33
CPSF4LA6NMK7 LETM1P2-201ENST00000597330 2178 ntBASIC17.09■□□□□ 0.33
CPSF4LA6NMK7 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPSF4LA6NMK7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CPSF4LA6NMK7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CPSF4LA6NMK7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.09■□□□□ 0.33
CPSF4LA6NMK7 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CPSF4LA6NMK7 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CPSF4LA6NMK7 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.09■□□□□ 0.33
CPSF4LA6NMK7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms