Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 AC020763.4-201ENST00000623414 4170 ntBASIC14.35□□□□□ -0.11
CCDC140Q96MF4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 SLC25A3P1-201ENST00000443844 931 ntBASIC14.34□□□□□ -0.11
CCDC140Q96MF4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 AL512604.3-201ENST00000569583 964 ntBASIC14.34□□□□□ -0.11
CCDC140Q96MF4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 AC112497.1-201ENST00000624824 639 ntBASIC14.34□□□□□ -0.11
CCDC140Q96MF4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 COMP-202ENST00000425807 2292 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC140Q96MF4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC140Q96MF4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
CCDC140Q96MF4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
CCDC140Q96MF4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC140Q96MF4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC14.33□□□□□ -0.11
CCDC140Q96MF4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC140Q96MF4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 ECEL1P3-201ENST00000427961 737 ntBASIC14.33□□□□□ -0.12
CCDC140Q96MF4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 AC012306.2-201ENST00000609350 630 ntBASIC14.33□□□□□ -0.12
CCDC140Q96MF4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 AC097493.4-201ENST00000641197 219 ntBASIC14.33□□□□□ -0.12
CCDC140Q96MF4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 AC099343.3-201ENST00000605834 2503 ntBASIC14.33□□□□□ -0.12
CCDC140Q96MF4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC140Q96MF4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
CCDC140Q96MF4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms