Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 SDR39U1-211ENST00000555355 934 ntTSL 212.36□□□□□ -0.434e-7■□□□□ 9
LSM11P83369 SDR39U1-213ENST00000555561 452 ntTSL 310.56□□□□□ -0.724e-7■□□□□ 9
LSM11P83369 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.142e-7■□□□□ 9
LSM11P83369 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.3■□□□□ 0.842e-7■□□□□ 9
LSM11P83369 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.522e-7■□□□□ 9
LSM11P83369 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.14■□□□□ 0.332e-7■□□□□ 9
LSM11P83369 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.75■□□□□ 0.272e-7■□□□□ 9
LSM11P83369 AC020916.1-201ENST00000587762 1774 ntBASIC16.59■□□□□ 0.252e-7■□□□□ 9
LSM11P83369 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.12e-7■□□□□ 9
LSM11P83369 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.44■□□□□ 0.062e-7■□□□□ 9
LSM11P83369 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.39■□□□□ 0.052e-7■□□□□ 9
LSM11P83369 TGIF1-221ENST00000552383 1267 ntTSL 214.46□□□□□ -0.092e-7■□□□□ 9
LSM11P83369 TGIF1-203ENST00000345133 1088 ntTSL 3 BASIC13.32□□□□□ -0.282e-7■□□□□ 9
LSM11P83369 MRPL20-204ENST00000487659 1693 ntTSL 213.18□□□□□ -0.32e-7■□□□□ 9
LSM11P83369 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.93□□□□□ -0.342e-7■□□□□ 9
LSM11P83369 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC12.16□□□□□ -0.462e-7■□□□□ 9
LSM11P83369 TGIF1-209ENST00000546979 554 ntTSL 311.62□□□□□ -0.552e-7■□□□□ 9
LSM11P83369 MRPL20-205ENST00000492508 588 ntTSL 29.36□□□□□ -0.912e-7■□□□□ 9
LSM11P83369 TGIF1-216ENST00000550958 706 ntTSL 38.39□□□□□ -1.072e-7■□□□□ 9
LSM11P83369 TGIF1-215ENST00000549780 801 ntTSL 57.17□□□□□ -1.262e-7■□□□□ 9
LSM11P83369 TGIF1-223ENST00000618001 3030 ntTSL 2 BASIC7.15□□□□□ -1.262e-7■□□□□ 9
LSM11P83369 MRPL20-206ENST00000493287 504 ntTSL 26.42□□□□□ -1.382e-7■□□□□ 9
LSM11P83369 TGIF1-214ENST00000549546 820 ntTSL 56.21□□□□□ -1.422e-7■□□□□ 9
LSM11P83369 TGIF1-212ENST00000549253 563 ntTSL 34.56□□□□□ -1.682e-7■□□□□ 9
LSM11P83369 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.443e-8■□□□□ 9
LSM11P83369 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.96■■□□□ 1.433e-8■□□□□ 9
LSM11P83369 GPS1-210ENST00000580141 924 ntTSL 513.56□□□□□ -0.241e-6■□□□□ 9
LSM11P83369 GGA1-218ENST00000475445 2614 ntTSL 213.42□□□□□ -0.261e-7■□□□□ 9
LSM11P83369 TRMT1-208ENST00000587487 813 ntTSL 311.73□□□□□ -0.531e-7■□□□□ 9
LSM11P83369 UBA1-209ENST00000490869 917 ntTSL 29.44□□□□□ -0.91e-7■□□□□ 9
LSM11P83369 CCNL2-216ENST00000488340 1598 ntTSL 219.95■□□□□ 0.787e-9■□□□□ 8.9
LSM11P83369 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.251e-8■□□□□ 8.9
LSM11P83369 TMEM63B-209ENST00000533121 2465 ntTSL 1 (best)14.88□□□□□ -0.031e-8■□□□□ 8.9
LSM11P83369 AC135050.2-201ENST00000533518 2362 ntTSL 1 (best)14.26□□□□□ -0.131e-8■□□□□ 8.9
LSM11P83369 TMEM63B-203ENST00000371893 2921 ntTSL 1 (best)14.25□□□□□ -0.131e-8■□□□□ 8.9
LSM11P83369 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.271e-8■□□□□ 8.9
LSM11P83369 PRSS53-202ENST00000486499 5489 ntTSL 213.33□□□□□ -0.281e-8■□□□□ 8.9
LSM11P83369 TMEM63B-201ENST00000259746 3318 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.541e-8■□□□□ 8.9
LSM11P83369 FLNB-211ENST00000484981 932 ntTSL 59.39□□□□□ -0.917e-13■□□□□ 8.9
LSM11P83369 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.056e-8■□□□□ 8.9
LSM11P83369 LCAT-208ENST00000575467 842 ntTSL 517.08■□□□□ 0.321e-6■□□□□ 8.9
LSM11P83369 LCAT-206ENST00000573846 568 ntTSL 216.97■□□□□ 0.311e-6■□□□□ 8.9
LSM11P83369 LCAT-207ENST00000575277 573 ntTSL 215.01□□□□□ -0.011e-6■□□□□ 8.9
LSM11P83369 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.413e-6■□□□□ 8.9
LSM11P83369 LLGL2-211ENST00000578638 2367 ntTSL 215.62■□□□□ 0.093e-6■□□□□ 8.9
LSM11P83369 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.97□□□□□ -0.013e-6■□□□□ 8.9
LSM11P83369 LLGL2-208ENST00000578034 485 ntTSL 214.5□□□□□ -0.093e-6■□□□□ 8.9
LSM11P83369 LLGL2-219ENST00000582393 599 ntTSL 314.33□□□□□ -0.123e-6■□□□□ 8.9
LSM11P83369 LLGL2-221ENST00000583514 409 ntTSL 313.48□□□□□ -0.253e-6■□□□□ 8.9
LSM11P83369 LLGL2-206ENST00000577211 543 ntTSL 312.81□□□□□ -0.363e-6■□□□□ 8.9
LSM11P83369 LLGL2-207ENST00000577500 2971 ntTSL 212.81□□□□□ -0.363e-6■□□□□ 8.9
LSM11P83369 LLGL2-205ENST00000577200 3192 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.523e-6■□□□□ 8.9
LSM11P83369 LLGL2-204ENST00000545227 3527 ntTSL 210.88□□□□□ -0.673e-6■□□□□ 8.9
LSM11P83369 SLC26A6-214ENST00000462009 825 ntTSL 317.34■□□□□ 0.373e-11■□□□□ 8.9
LSM11P83369 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.333e-6■□□□□ 8.9
LSM11P83369 ATAT1-209ENST00000471782 1527 ntTSL 1 (best)12.69□□□□□ -0.383e-6■□□□□ 8.9
LSM11P83369 ATAT1-210ENST00000479562 691 ntTSL 512.6□□□□□ -0.393e-6■□□□□ 8.9
LSM11P83369 ATAT1-204ENST00000330083 1728 ntTSL 1 (best) BASIC11.93□□□□□ -0.53e-6■□□□□ 8.9
LSM11P83369 ATAT1-208ENST00000468713 1195 ntTSL 37.49□□□□□ -1.213e-6■□□□□ 8.9
LSM11P83369 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.092e-6■□□□□ 8.9
LSM11P83369 USP7-208ENST00000563961 4533 ntTSL 513.22□□□□□ -0.292e-6■□□□□ 8.9
LSM11P83369 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC4.93□□□□□ -1.622e-6■□□□□ 8.9
LSM11P83369 COL18A1-207ENST00000473212 2515 ntTSL 220.06■□□□□ 0.84e-8■□□□□ 8.9
LSM11P83369 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.791e-6■□□□□ 8.9
LSM11P83369 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.39■□□□□ 0.541e-6■□□□□ 8.9
LSM11P83369 DVL3-207ENST00000478247 2272 ntTSL 517.28■□□□□ 0.361e-6■□□□□ 8.9
LSM11P83369 PLXND1-202ENST00000501038 1633 ntTSL 1 (best)17.22■□□□□ 0.351e-6■□□□□ 8.9
LSM11P83369 PLXND1-204ENST00000504524 1701 ntTSL 1 (best)16.94■□□□□ 0.31e-6■□□□□ 8.9
LSM11P83369 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.45■□□□□ 0.221e-6■□□□□ 8.9
LSM11P83369 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.141e-6■□□□□ 8.9
LSM11P83369 PLXND1-214ENST00000512744 2662 ntTSL 1 (best)15.92■□□□□ 0.141e-6■□□□□ 8.9
LSM11P83369 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.061e-6■□□□□ 8.9
LSM11P83369 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.224e-7■□□□□ 8.9
LSM11P83369 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.62□□□□□ -0.233e-7■□□□□ 8.9
LSM11P83369 LENG8-203ENST00000421200 594 ntTSL 313.35□□□□□ -0.273e-68■□□□□ 8.9
LSM11P83369 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC12.97□□□□□ -0.334e-7■□□□□ 8.9
LSM11P83369 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.344e-7■□□□□ 8.9
LSM11P83369 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.481e-6■□□□□ 8.9
LSM11P83369 TBC1D8-201ENST00000376840 3627 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.553e-7■□□□□ 8.9
LSM11P83369 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.581e-6■□□□□ 8.9
LSM11P83369 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.711e-6■□□□□ 8.9
LSM11P83369 NSD2-202ENST00000353275 7980 ntTSL 1 (best)10.09□□□□□ -0.791e-6■□□□□ 8.9
LSM11P83369 NSD2-201ENST00000312087 8050 ntTSL 1 (best)9.25□□□□□ -0.931e-6■□□□□ 8.9
LSM11P83369 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.728e-11■□□□□ 8.9
LSM11P83369 DDX5-214ENST00000580026 1171 ntTSL 29.06□□□□□ -0.964e-24■□□□□ 8.9
LSM11P83369 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.913e-7■□□□□ 8.9
LSM11P83369 LAMA5-209ENST00000481120 386 ntTSL 219.68■□□□□ 0.742e-9■□□□□ 8.9
LSM11P83369 RPS8-207ENST00000485390 1115 ntTSL 1 (best)18.41■□□□□ 0.543e-7■□□□□ 8.9
LSM11P83369 STXBP2-205ENST00000593854 704 ntTSL 215.89■□□□□ 0.133e-7■□□□□ 8.9
LSM11P83369 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.071e-13■□□□□ 8.9
LSM11P83369 RPS8-206ENST00000484599 852 ntTSL 314.68□□□□□ -0.063e-7■□□□□ 8.9
LSM11P83369 RPS8-202ENST00000396651 881 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.383e-7■□□□□ 8.9
LSM11P83369 RPS8-205ENST00000474582 391 ntTSL 1 (best)12.65□□□□□ -0.383e-7■□□□□ 8.9
LSM11P83369 RPS8-203ENST00000464658 898 ntTSL 210.68□□□□□ -0.73e-7■□□□□ 8.9
LSM11P83369 RNF217-210ENST00000521654 11325 ntAPPRIS P2 TSL 2 BASIC10.55□□□□□ -0.721e-13■□□□□ 8.9
LSM11P83369 RPS8-201ENST00000372209 685 ntTSL 2 BASIC10.55□□□□□ -0.723e-7■□□□□ 8.9
LSM11P83369 CCT5-210ENST00000511995 1091 ntTSL 210.34□□□□□ -0.753e-7■□□□□ 8.9
LSM11P83369 RNF217-206ENST00000454842 545 ntTSL 46.27□□□□□ -1.411e-13■□□□□ 8.9
LSM11P83369 RNF217-207ENST00000519565 10660 ntTSL 53.78□□□□□ -1.81e-13■□□□□ 8.9
LSM11P83369 PAXX-202ENST00000463765 496 ntTSL 215.2■□□□□ 0.025e-8■□□□□ 8.9
Retrieved 100 of 11,495 protein–RNA pairs in 446 ms