Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PKNOX1P55347 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.21■□□□□ 0.51
PKNOX1P55347 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.21■□□□□ 0.51
PKNOX1P55347 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PKNOX1P55347 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.21■□□□□ 0.51
PKNOX1P55347 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.21■□□□□ 0.51
PKNOX1P55347 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PKNOX1P55347 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.21■□□□□ 0.51
PKNOX1P55347 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.21■□□□□ 0.51
PKNOX1P55347 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.21■□□□□ 0.51
PKNOX1P55347 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.21■□□□□ 0.51
PKNOX1P55347 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.21■□□□□ 0.51
PKNOX1P55347 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.21■□□□□ 0.51
PKNOX1P55347 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PKNOX1P55347 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PKNOX1P55347 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
PKNOX1P55347 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
PKNOX1P55347 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
PKNOX1P55347 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.2■□□□□ 0.5
PKNOX1P55347 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.2■□□□□ 0.5
PKNOX1P55347 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PKNOX1P55347 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
PKNOX1P55347 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.2■□□□□ 0.5
PKNOX1P55347 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
PKNOX1P55347 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.2■□□□□ 0.5
PKNOX1P55347 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
PKNOX1P55347 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 AC128676.1-201ENST00000454392 318 ntBASIC18.2■□□□□ 0.5
PKNOX1P55347 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.2■□□□□ 0.5
PKNOX1P55347 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.2■□□□□ 0.5
PKNOX1P55347 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.2■□□□□ 0.5
PKNOX1P55347 AL031985.4-201ENST00000642138 673 ntBASIC18.2■□□□□ 0.5
PKNOX1P55347 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.2■□□□□ 0.5
PKNOX1P55347 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
PKNOX1P55347 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.2■□□□□ 0.5
PKNOX1P55347 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PKNOX1P55347 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
PKNOX1P55347 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.19■□□□□ 0.5
PKNOX1P55347 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PKNOX1P55347 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
PKNOX1P55347 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PKNOX1P55347 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
PKNOX1P55347 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.19■□□□□ 0.5
PKNOX1P55347 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.19■□□□□ 0.5
PKNOX1P55347 C1QBPP2-201ENST00000528754 825 ntBASIC18.19■□□□□ 0.5
PKNOX1P55347 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.19■□□□□ 0.5
PKNOX1P55347 AC112777.1-201ENST00000540175 1423 ntBASIC18.19■□□□□ 0.5
PKNOX1P55347 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
PKNOX1P55347 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.19■□□□□ 0.5
PKNOX1P55347 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.19■□□□□ 0.5
PKNOX1P55347 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms