Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 AC008556.1-201ENST00000610908 2040 ntBASIC19.15■□□□□ 0.66
USP29Q9HBJ7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 C2orf69P3-201ENST00000565542 1120 ntBASIC19.15■□□□□ 0.66
USP29Q9HBJ7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 AC112777.1-201ENST00000540175 1423 ntBASIC19.15■□□□□ 0.66
USP29Q9HBJ7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP29Q9HBJ7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
USP29Q9HBJ7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
USP29Q9HBJ7 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
USP29Q9HBJ7 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
USP29Q9HBJ7 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 MFAP1P1-201ENST00000442257 1255 ntBASIC19.14■□□□□ 0.65
USP29Q9HBJ7 SLC25A3P1-201ENST00000443844 931 ntBASIC19.14■□□□□ 0.65
USP29Q9HBJ7 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 CYP2D8P-201ENST00000433633 1490 ntBASIC19.14■□□□□ 0.65
USP29Q9HBJ7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.14■□□□□ 0.65
USP29Q9HBJ7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 TERF1P1-201ENST00000311003 1181 ntBASIC19.13■□□□□ 0.65
USP29Q9HBJ7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 AL023284.2-201ENST00000405850 579 ntBASIC19.13■□□□□ 0.65
USP29Q9HBJ7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 AL390955.1-201ENST00000428694 934 ntBASIC19.13■□□□□ 0.65
USP29Q9HBJ7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 KRT18P41-201ENST00000518924 1277 ntBASIC19.13■□□□□ 0.65
USP29Q9HBJ7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 SLC25A1P4-201ENST00000567977 778 ntBASIC19.13■□□□□ 0.65
USP29Q9HBJ7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.13■□□□□ 0.65
USP29Q9HBJ7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms