Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC13.01□□□□□ -0.33
CKS1BP61024 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC13.01□□□□□ -0.33
CKS1BP61024 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CKS1BP61024 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
CKS1BP61024 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CKS1BP61024 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.01□□□□□ -0.33
CKS1BP61024 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CKS1BP61024 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CKS1BP61024 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13□□□□□ -0.33
CKS1BP61024 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC13□□□□□ -0.33
CKS1BP61024 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CKS1BP61024 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC13□□□□□ -0.33
CKS1BP61024 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC13□□□□□ -0.33
CKS1BP61024 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC13□□□□□ -0.33
CKS1BP61024 AC034268.1-201ENST00000441047 882 ntBASIC13□□□□□ -0.33
CKS1BP61024 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 CYP2T3P-201ENST00000601990 817 ntBASIC13□□□□□ -0.33
CKS1BP61024 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13□□□□□ -0.33
CKS1BP61024 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CKS1BP61024 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC13□□□□□ -0.33
CKS1BP61024 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13□□□□□ -0.33
CKS1BP61024 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CKS1BP61024 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC12.99□□□□□ -0.33
CKS1BP61024 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC12.99□□□□□ -0.33
CKS1BP61024 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC12.99□□□□□ -0.33
CKS1BP61024 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC12.99□□□□□ -0.33
CKS1BP61024 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 LINC00554-201ENST00000564841 3011 ntBASIC12.99□□□□□ -0.33
CKS1BP61024 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC12.99□□□□□ -0.33
CKS1BP61024 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC12.99□□□□□ -0.33
CKS1BP61024 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC12.99□□□□□ -0.33
CKS1BP61024 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
CKS1BP61024 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CKS1BP61024 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC12.99□□□□□ -0.33
CKS1BP61024 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms