Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
HMGB1P09429 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB1P09429 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB1P09429 INGX-201ENST00000359239 846 ntBASIC21.91■■□□□ 1.1
HMGB1P09429 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB1P09429 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB1P09429 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.91■■□□□ 1.1
HMGB1P09429 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB1P09429 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.91■■□□□ 1.1
HMGB1P09429 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
HMGB1P09429 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
HMGB1P09429 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB1P09429 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB1P09429 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB1P09429 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
HMGB1P09429 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB1P09429 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB1P09429 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB1P09429 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB1P09429 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB1P09429 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB1P09429 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB1P09429 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
HMGB1P09429 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.9■■□□□ 1.1
HMGB1P09429 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB1P09429 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.9■■□□□ 1.1
HMGB1P09429 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB1P09429 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB1P09429 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.9■■□□□ 1.1
HMGB1P09429 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB1P09429 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB1P09429 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGB1P09429 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB1P09429 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGB1P09429 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
HMGB1P09429 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HMGB1P09429 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
HMGB1P09429 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
HMGB1P09429 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.89■■□□□ 1.1
HMGB1P09429 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB1P09429 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB1P09429 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
HMGB1P09429 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.89■■□□□ 1.09
HMGB1P09429 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB1P09429 KRT18P23-201ENST00000435622 1283 ntBASIC21.89■■□□□ 1.09
HMGB1P09429 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.89■■□□□ 1.09
HMGB1P09429 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.89■■□□□ 1.09
HMGB1P09429 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.89■■□□□ 1.09
HMGB1P09429 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.89■■□□□ 1.09
HMGB1P09429 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
HMGB1P09429 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB1P09429 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB1P09429 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB1P09429 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB1P09429 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
HMGB1P09429 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.88■■□□□ 1.09
HMGB1P09429 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
HMGB1P09429 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
HMGB1P09429 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
HMGB1P09429 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
HMGB1P09429 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 HMGA1P5-201ENST00000412453 271 ntBASIC21.88■■□□□ 1.09
HMGB1P09429 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 FAM87A-204ENST00000613235 858 ntBASIC21.88■■□□□ 1.09
HMGB1P09429 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.88■■□□□ 1.09
HMGB1P09429 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.88■■□□□ 1.09
HMGB1P09429 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
HMGB1P09429 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.88■■□□□ 1.09
HMGB1P09429 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.88■■□□□ 1.09
HMGB1P09429 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HMGB1P09429 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.87■■□□□ 1.09
HMGB1P09429 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 AL163051.1-201ENST00000569214 1512 ntBASIC21.87■■□□□ 1.09
HMGB1P09429 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
HMGB1P09429 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms