Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.84■□□□□ 0.13
SDCBPO00560 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC15.84■□□□□ 0.13
SDCBPO00560 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SDCBPO00560 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SDCBPO00560 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SDCBPO00560 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SDCBPO00560 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SDCBPO00560 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SDCBPO00560 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.83■□□□□ 0.13
SDCBPO00560 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
SDCBPO00560 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC15.83■□□□□ 0.12
SDCBPO00560 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC15.83■□□□□ 0.12
SDCBPO00560 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC15.83■□□□□ 0.12
SDCBPO00560 AC073648.6-201ENST00000641589 218 ntBASIC15.83■□□□□ 0.12
SDCBPO00560 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
SDCBPO00560 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
SDCBPO00560 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC15.83■□□□□ 0.12
SDCBPO00560 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SDCBPO00560 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15.83■□□□□ 0.12
SDCBPO00560 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SDCBPO00560 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.83■□□□□ 0.12
SDCBPO00560 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC15.83■□□□□ 0.12
SDCBPO00560 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.82■□□□□ 0.12
SDCBPO00560 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC15.82■□□□□ 0.12
SDCBPO00560 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.82■□□□□ 0.12
SDCBPO00560 KRT16P5-201ENST00000455284 522 ntBASIC15.82■□□□□ 0.12
SDCBPO00560 AL160286.2-201ENST00000567150 934 ntBASIC15.82■□□□□ 0.12
SDCBPO00560 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.82■□□□□ 0.12
SDCBPO00560 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.82■□□□□ 0.12
SDCBPO00560 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.82■□□□□ 0.12
SDCBPO00560 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SDCBPO00560 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SDCBPO00560 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.81■□□□□ 0.12
SDCBPO00560 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SDCBPO00560 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.81■□□□□ 0.12
SDCBPO00560 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.81■□□□□ 0.12
SDCBPO00560 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.81■□□□□ 0.12
SDCBPO00560 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SDCBPO00560 RN7SL471P-201ENST00000580476 299 ntBASIC15.81■□□□□ 0.12
SDCBPO00560 MIR4651-201ENST00000582622 73 ntBASIC15.81■□□□□ 0.12
SDCBPO00560 AC124016.1-201ENST00000609552 612 ntBASIC15.81■□□□□ 0.12
SDCBPO00560 AC110285.5-201ENST00000611501 352 ntBASIC15.81■□□□□ 0.12
SDCBPO00560 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.81■□□□□ 0.12
SDCBPO00560 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.81■□□□□ 0.12
SDCBPO00560 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SDCBPO00560 HLA-A-209ENST00000638375 975 ntBASIC15.81■□□□□ 0.12
SDCBPO00560 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC15.81■□□□□ 0.12
SDCBPO00560 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.81■□□□□ 0.12
SDCBPO00560 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SDCBPO00560 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms