Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AL138781.1-201ENST00000566567 1274 ntBASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHMP1AQ9HD42 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 AL512353.2-201ENST00000448759 1962 ntBASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.03■□□□□ 0.16
CHMP1AQ9HD42 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.02■□□□□ 0.16
CHMP1AQ9HD42 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
CHMP1AQ9HD42 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 AC098934.4-201ENST00000564127 592 ntBASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 AC083880.1-201ENST00000608266 535 ntBASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHMP1AQ9HD42 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CHMP1AQ9HD42 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CHMP1AQ9HD42 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms