Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.53■□□□□ 0.88
TPM1P09493 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.53■□□□□ 0.88
TPM1P09493 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TPM1P09493 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM1P09493 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM1P09493 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TPM1P09493 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM1P09493 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM1P09493 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
TPM1P09493 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
TPM1P09493 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TPM1P09493 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
TPM1P09493 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM1P09493 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM1P09493 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.52■□□□□ 0.88
TPM1P09493 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.52■□□□□ 0.88
TPM1P09493 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM1P09493 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TPM1P09493 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TPM1P09493 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.52■□□□□ 0.87
TPM1P09493 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
TPM1P09493 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.52■□□□□ 0.87
TPM1P09493 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
TPM1P09493 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TPM1P09493 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
TPM1P09493 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
TPM1P09493 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.51■□□□□ 0.87
TPM1P09493 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.51■□□□□ 0.87
TPM1P09493 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.51■□□□□ 0.87
TPM1P09493 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
TPM1P09493 IKBKGP1-201ENST00000612193 1073 ntBASIC20.51■□□□□ 0.87
TPM1P09493 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 OR6D1P-203ENST00000641209 4860 ntBASIC20.51■□□□□ 0.87
TPM1P09493 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.51■□□□□ 0.87
TPM1P09493 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.51■□□□□ 0.87
TPM1P09493 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.51■□□□□ 0.87
TPM1P09493 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.51■□□□□ 0.87
TPM1P09493 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TPM1P09493 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.5■□□□□ 0.87
TPM1P09493 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.5■□□□□ 0.87
TPM1P09493 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.5■□□□□ 0.87
TPM1P09493 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.5■□□□□ 0.87
TPM1P09493 AC004264.1-201ENST00000608354 794 ntBASIC20.5■□□□□ 0.87
TPM1P09493 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
TPM1P09493 HLA-A-209ENST00000638375 975 ntBASIC20.5■□□□□ 0.87
TPM1P09493 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.5■□□□□ 0.87
TPM1P09493 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TPM1P09493 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.5■□□□□ 0.87
TPM1P09493 RCC2P6-201ENST00000526625 1557 ntBASIC20.5■□□□□ 0.87
TPM1P09493 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.5■□□□□ 0.87
TPM1P09493 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
TPM1P09493 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
TPM1P09493 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.49■□□□□ 0.87
TPM1P09493 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
TPM1P09493 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.49■□□□□ 0.87
TPM1P09493 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.49■□□□□ 0.87
TPM1P09493 C1QL1P1-201ENST00000568105 661 ntBASIC20.49■□□□□ 0.87
TPM1P09493 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.49■□□□□ 0.87
TPM1P09493 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
TPM1P09493 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.49■□□□□ 0.87
TPM1P09493 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.49■□□□□ 0.87
TPM1P09493 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TPM1P09493 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms