Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 AC079834.2-201ENST00000609776 1949 ntBASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 AC092720.2-201ENST00000602388 1665 ntBASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 AC109322.1-201ENST00000524499 1264 ntBASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC85CA6NKD9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 ATP5G2P4-201ENST00000442175 420 ntBASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC85CA6NKD9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 DUX4L27-201ENST00000554796 1261 ntBASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 AC073592.5-201ENST00000624854 528 ntBASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 PLK5-205ENST00000642079 1969 ntBASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC85CA6NKD9 SMG8-203ENST00000578922 2178 ntBASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 MIR3180-4-201ENST00000582223 153 ntBASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC85CA6NKD9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.52■□□□□ 0.87
CCDC85CA6NKD9 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms