Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 AC093458.2-201ENST00000623150 629 ntBASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC60Q8IWA6 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC60Q8IWA6 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC60Q8IWA6 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 KRT18P41-201ENST00000518924 1277 ntBASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 MIR3180-4-201ENST00000582223 153 ntBASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 AC069148.1-201ENST00000608741 768 ntBASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 AL162741.1-201ENST00000565563 1558 ntBASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC60Q8IWA6 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 MIR662-201ENST00000384847 95 ntBASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC60Q8IWA6 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 PVRIG2P-201ENST00000435460 978 ntBASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC60Q8IWA6 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC60Q8IWA6 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC60Q8IWA6 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC60Q8IWA6 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC60Q8IWA6 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms