Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 SLC25A6P5-201ENST00000435663 894 ntBASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 KSR1P1-201ENST00000446298 240 ntBASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 ESPNP-201ENST00000270691 2015 ntBASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRIF1Q5T3J3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 MYLKP1-201ENST00000509077 1580 ntBASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 HLA-L-209ENST00000420110 1011 ntBASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 RPS2P4-201ENST00000476944 856 ntBASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 CKBP1-201ENST00000565489 1086 ntBASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
LRIF1Q5T3J3 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LRIF1Q5T3J3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.58■□□□□ 0.41
LRIF1Q5T3J3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
LRIF1Q5T3J3 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LRIF1Q5T3J3 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LRIF1Q5T3J3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.58■□□□□ 0.41
LRIF1Q5T3J3 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 AC026271.3-201ENST00000571884 352 ntBASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 RN7SL471P-201ENST00000580476 299 ntBASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LRIF1Q5T3J3 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.57■□□□□ 0.4
LRIF1Q5T3J3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.57■□□□□ 0.4
LRIF1Q5T3J3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.57■□□□□ 0.4
LRIF1Q5T3J3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRIF1Q5T3J3 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRIF1Q5T3J3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRIF1Q5T3J3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRIF1Q5T3J3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms