Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
HLA-DQA1P01909 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 AL118508.1-201ENST00000613502 2345 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DUX4L2-201ENST00000561772 1275 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DUX4L6-201ENST00000626483 1275 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DUX4L1-201ENST00000627662 1275 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DUX4L8-201ENST00000629013 1275 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DUX4L3-201ENST00000630187 1275 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DUX4L7-201ENST00000630678 1275 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DUX4L5-201ENST00000630834 1275 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 SDHAP1-207ENST00000440850 2000 ntBASIC14.03□□□□□ -0.16
HLA-DQA1P01909 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HLA-DQA1P01909 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 CYP21A1P-202ENST00000354927 1481 ntBASIC14.02□□□□□ -0.16
HLA-DQA1P01909 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HLA-DQA1P01909 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 TESC-206ENST00000541210 936 ntTSL 3 BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 AC046158.3-201ENST00000624947 2558 ntBASIC14.02□□□□□ -0.17
HLA-DQA1P01909 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HLA-DQA1P01909 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.01□□□□□ -0.17
HLA-DQA1P01909 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms