Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 REXO1L10P-201ENST00000615707 1290 ntBASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC004951.3-201ENST00000418645 1148 ntBASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KLK8-205ENST00000593490 267 ntTSL 3 BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC130371.2-201ENST00000619443 611 ntBASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AL031985.4-201ENST00000642138 673 ntBASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KRT18P22-201ENST00000402024 1347 ntBASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ISCU-203ENST00000431221 799 ntTSL 2 BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC246785.2-201ENST00000432512 513 ntBASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SLC25A3P1-201ENST00000443844 931 ntBASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC25.14■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC25.14■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TBC1D3P2-202ENST00000577902 1649 ntBASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC25.13■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms