Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 AL031985.4-201ENST00000642138 673 ntBASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMA1Q9UHB6 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 ESPNP-201ENST00000270691 2015 ntBASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 AC011506.1-201ENST00000474329 610 ntBASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 AL109659.2-201ENST00000606809 1674 ntBASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 AP000997.3-201ENST00000623333 2250 ntBASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMA1Q9UHB6 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 AL353807.1-201ENST00000427475 662 ntBASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 AC006058.3-201ENST00000606217 1069 ntBASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 CR392000.1-201ENST00000624770 1228 ntBASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
LIMA1Q9UHB6 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIMA1Q9UHB6 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIMA1Q9UHB6 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIMA1Q9UHB6 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIMA1Q9UHB6 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.39■□□□□ 0.86
LIMA1Q9UHB6 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.39■□□□□ 0.86
LIMA1Q9UHB6 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIMA1Q9UHB6 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LIMA1Q9UHB6 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LIMA1Q9UHB6 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMA1Q9UHB6 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMA1Q9UHB6 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.39■□□□□ 0.85
LIMA1Q9UHB6 AC020763.4-201ENST00000623414 4170 ntBASIC20.39■□□□□ 0.85
LIMA1Q9UHB6 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMA1Q9UHB6 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms