Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 PVRIG2P-201ENST00000435460 978 ntBASIC21.11■□□□□ 0.97
COL20A1Q9P218 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.11■□□□□ 0.97
COL20A1Q9P218 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.11■□□□□ 0.97
COL20A1Q9P218 LITAF-220ENST00000620789 692 ntTSL 5 BASIC21.11■□□□□ 0.97
COL20A1Q9P218 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.11■□□□□ 0.97
COL20A1Q9P218 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.11■□□□□ 0.97
COL20A1Q9P218 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
COL20A1Q9P218 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 TSSC2-201ENST00000450217 709 ntBASIC21.1■□□□□ 0.97
COL20A1Q9P218 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 MIR3180-1-201ENST00000580374 94 ntBASIC21.1■□□□□ 0.97
COL20A1Q9P218 MIR3180-4-201ENST00000582223 153 ntBASIC21.1■□□□□ 0.97
COL20A1Q9P218 MIR3180-3-201ENST00000584616 94 ntBASIC21.1■□□□□ 0.97
COL20A1Q9P218 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 CLEC4GP1-201ENST00000596555 870 ntBASIC21.1■□□□□ 0.97
COL20A1Q9P218 AC012313.10-201ENST00000623509 926 ntBASIC21.1■□□□□ 0.97
COL20A1Q9P218 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL20A1Q9P218 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.1■□□□□ 0.97
COL20A1Q9P218 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL20A1Q9P218 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL20A1Q9P218 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL20A1Q9P218 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL20A1Q9P218 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL20A1Q9P218 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL20A1Q9P218 KRT18P48-201ENST00000434763 852 ntBASIC21.09■□□□□ 0.97
COL20A1Q9P218 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 KRT18P41-201ENST00000518924 1277 ntBASIC21.09■□□□□ 0.97
COL20A1Q9P218 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL20A1Q9P218 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL20A1Q9P218 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.09■□□□□ 0.97
COL20A1Q9P218 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL20A1Q9P218 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL20A1Q9P218 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL20A1Q9P218 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL20A1Q9P218 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.08■□□□□ 0.97
COL20A1Q9P218 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.08■□□□□ 0.97
COL20A1Q9P218 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.08■□□□□ 0.97
COL20A1Q9P218 AC099343.3-201ENST00000605834 2503 ntBASIC21.08■□□□□ 0.97
COL20A1Q9P218 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL20A1Q9P218 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
COL20A1Q9P218 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL20A1Q9P218 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL20A1Q9P218 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
COL20A1Q9P218 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.08■□□□□ 0.97
COL20A1Q9P218 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.08■□□□□ 0.97
COL20A1Q9P218 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL20A1Q9P218 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
COL20A1Q9P218 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL20A1Q9P218 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.08■□□□□ 0.96
COL20A1Q9P218 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.08■□□□□ 0.96
COL20A1Q9P218 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL20A1Q9P218 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
COL20A1Q9P218 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.07■□□□□ 0.96
COL20A1Q9P218 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.07■□□□□ 0.96
COL20A1Q9P218 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.07■□□□□ 0.96
COL20A1Q9P218 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
COL20A1Q9P218 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL20A1Q9P218 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.07■□□□□ 0.96
COL20A1Q9P218 BX276092.5-203ENST00000456199 560 ntBASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms