Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 FSCN1P1-201ENST00000568912 1481 ntBASIC19.25■□□□□ 0.67
USP29Q9HBJ7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 MIR1238-201ENST00000408483 83 ntBASIC19.25■□□□□ 0.67
USP29Q9HBJ7 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 RN7SL850P-201ENST00000579959 291 ntBASIC19.25■□□□□ 0.67
USP29Q9HBJ7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 AL590326.2-201ENST00000625139 305 ntBASIC19.25■□□□□ 0.67
USP29Q9HBJ7 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 AL357033.4-201ENST00000617703 1807 ntBASIC19.25■□□□□ 0.67
USP29Q9HBJ7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USP29Q9HBJ7 KRT18P22-201ENST00000402024 1347 ntBASIC19.25■□□□□ 0.67
USP29Q9HBJ7 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 LINC01568-207ENST00000641790 1380 ntBASIC19.24■□□□□ 0.67
USP29Q9HBJ7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
USP29Q9HBJ7 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 AL390961.4-201ENST00000623958 2535 ntBASIC19.23■□□□□ 0.67
USP29Q9HBJ7 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 AL354751.1-201ENST00000412768 1863 ntBASIC19.23■□□□□ 0.67
USP29Q9HBJ7 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 AC113347.1-201ENST00000413321 391 ntBASIC19.23■□□□□ 0.67
USP29Q9HBJ7 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms