Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 AL390961.4-201ENST00000623958 2535 ntBASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 HTR7P1-201ENST00000538670 1336 ntBASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 NIFKP9-201ENST00000419265 221 ntBASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 AC093827.2-201ENST00000512654 315 ntBASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 HTR7P1-202ENST00000624664 4411 ntBASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM56Q9BRZ2 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 AC008040.2-201ENST00000461049 708 ntBASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 RCC2P6-201ENST00000526625 1557 ntBASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.05■□□□□ 0.64
TRIM56Q9BRZ2 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 BICD1-207ENST00000551848 1962 ntBASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 AC091390.4-202ENST00000476426 537 ntBASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms