Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.39■□□□□ 0.37
DEPDC4Q8N2C3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 AL359736.2-201ENST00000621992 437 ntBASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 AC012183.1-201ENST00000625197 499 ntBASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DEPDC4Q8N2C3 AC073592.3-201ENST00000625118 1834 ntBASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 MIR718-201ENST00000390190 70 ntBASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DEPDC4Q8N2C3 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DEPDC4Q8N2C3 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms