Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 SNX18-202ENST00000343017 3140 ntBASIC10.83□□□□□ -0.68
RPS28P62857 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 AL391807.1-203ENST00000604392 2365 ntBASIC10.83□□□□□ -0.68
RPS28P62857 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
RPS28P62857 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
RPS28P62857 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPS28P62857 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC10.83□□□□□ -0.68
RPS28P62857 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC10.83□□□□□ -0.68
RPS28P62857 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC10.83□□□□□ -0.68
RPS28P62857 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC10.82□□□□□ -0.68
RPS28P62857 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 FP475955.4-201ENST00000623131 1990 ntBASIC10.82□□□□□ -0.68
RPS28P62857 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC10.82□□□□□ -0.68
RPS28P62857 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
RPS28P62857 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPS28P62857 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC10.82□□□□□ -0.68
RPS28P62857 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
RPS28P62857 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC10.81□□□□□ -0.68
RPS28P62857 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC10.81□□□□□ -0.68
RPS28P62857 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
RPS28P62857 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
RPS28P62857 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 MBP-202ENST00000355994 2772 ntTSL 5 BASIC10.81□□□□□ -0.68
RPS28P62857 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
RPS28P62857 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
RPS28P62857 AC010327.5-201ENST00000586923 3061 ntBASIC10.81□□□□□ -0.68
RPS28P62857 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC10.81□□□□□ -0.68
RPS28P62857 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC10.81□□□□□ -0.68
RPS28P62857 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC10.81□□□□□ -0.68
RPS28P62857 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC10.81□□□□□ -0.68
RPS28P62857 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
RPS28P62857 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC10.81□□□□□ -0.68
RPS28P62857 AC015656.1-201ENST00000624209 3578 ntBASIC10.81□□□□□ -0.68
RPS28P62857 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms