Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HOXD4P09016 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXD4P09016 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXD4P09016 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXD4P09016 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXD4P09016 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HOXD4P09016 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.92■□□□□ 0.3
HOXD4P09016 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXD4P09016 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 STARP1-201ENST00000397973 869 ntBASIC16.92■□□□□ 0.3
HOXD4P09016 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 PCED1CP-201ENST00000419887 785 ntBASIC16.92■□□□□ 0.3
HOXD4P09016 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.92■□□□□ 0.3
HOXD4P09016 FAM86EP-206ENST00000510506 987 ntBASIC16.92■□□□□ 0.3
HOXD4P09016 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.92■□□□□ 0.3
HOXD4P09016 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXD4P09016 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.92■□□□□ 0.3
HOXD4P09016 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXD4P09016 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXD4P09016 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXD4P09016 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
HOXD4P09016 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.92■□□□□ 0.3
HOXD4P09016 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HOXD4P09016 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.92■□□□□ 0.3
HOXD4P09016 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HOXD4P09016 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HOXD4P09016 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.91■□□□□ 0.3
HOXD4P09016 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.91■□□□□ 0.3
HOXD4P09016 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HOXD4P09016 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXD4P09016 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.91■□□□□ 0.3
HOXD4P09016 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXD4P09016 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.91■□□□□ 0.3
HOXD4P09016 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HOXD4P09016 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
HOXD4P09016 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.9■□□□□ 0.3
HOXD4P09016 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
HOXD4P09016 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXD4P09016 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXD4P09016 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXD4P09016 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXD4P09016 KRT18P48-201ENST00000434763 852 ntBASIC16.9■□□□□ 0.3
HOXD4P09016 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXD4P09016 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.9■□□□□ 0.3
HOXD4P09016 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXD4P09016 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.9■□□□□ 0.3
HOXD4P09016 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HOXD4P09016 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.9■□□□□ 0.3
HOXD4P09016 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.9■□□□□ 0.3
HOXD4P09016 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.9■□□□□ 0.3
HOXD4P09016 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.9■□□□□ 0.3
HOXD4P09016 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HOXD4P09016 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HOXD4P09016 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HOXD4P09016 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
HOXD4P09016 IER3-202ENST00000376377 1350 ntBASIC16.89■□□□□ 0.3
HOXD4P09016 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.89■□□□□ 0.3
HOXD4P09016 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
HOXD4P09016 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.3
HOXD4P09016 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
HOXD4P09016 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.89■□□□□ 0.29
HOXD4P09016 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 AL359075.1-203ENST00000462729 1002 ntBASIC16.89■□□□□ 0.29
HOXD4P09016 AC034232.1-201ENST00000506026 1064 ntBASIC16.89■□□□□ 0.29
HOXD4P09016 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.89■□□□□ 0.29
HOXD4P09016 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.89■□□□□ 0.29
HOXD4P09016 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HOXD4P09016 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms