Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 AC011298.2-201ENST00000617989 482 ntBASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 CR392000.1-201ENST00000624770 1228 ntBASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 RCC2P3-201ENST00000418112 1537 ntBASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHA3Q9Y5H8 AIRN-201ENST00000601203 4374 ntBASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 C1QBPP2-201ENST00000528754 825 ntBASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHA3Q9Y5H8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 AC011506.1-201ENST00000474329 610 ntBASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 AF186192.3-201ENST00000583427 947 ntBASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHA3Q9Y5H8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHA3Q9Y5H8 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms