Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PCDHGA3Q9Y5H0 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA3Q9Y5H0 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA3Q9Y5H0 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA3Q9Y5H0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 AL359075.1-203ENST00000462729 1002 ntBASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 KRT18P56-201ENST00000507275 550 ntBASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 AC120498.9-201ENST00000339021 3867 ntBASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.17■□□□□ 0.5
PCDHGA3Q9Y5H0 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 AC116407.4-201ENST00000623319 1061 ntBASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.16■□□□□ 0.5
PCDHGA3Q9Y5H0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 AL136038.3-201ENST00000561909 1096 ntBASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 AC093484.2-201ENST00000580996 2166 ntBASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCDHGA3Q9Y5H0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PCDHGA3Q9Y5H0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms