Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 AC073648.6-201ENST00000641589 218 ntBASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMA1Q9UHB6 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 KRT18P41-201ENST00000518924 1277 ntBASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMA1Q9UHB6 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 AC026271.3-201ENST00000571884 352 ntBASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 AC011298.2-201ENST00000617989 482 ntBASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 AC130371.2-201ENST00000619443 611 ntBASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 KRT16P1-201ENST00000399124 1418 ntBASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.44■□□□□ 0.86
LIMA1Q9UHB6 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 MYLKP1-201ENST00000509077 1580 ntBASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMA1Q9UHB6 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms