Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.04□□□□□ -0.16
LINC00477Q96M19 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00477Q96M19 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 APTR-205ENST00000447009 902 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 AC133681.1-201ENST00000465482 601 ntBASIC14.03□□□□□ -0.16
LINC00477Q96M19 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 MMAB-206ENST00000540016 945 ntTSL 3 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 AC068587.9-201ENST00000641814 219 ntBASIC14.03□□□□□ -0.16
LINC00477Q96M19 KRT8P3-201ENST00000519669 1449 ntBASIC14.03□□□□□ -0.16
LINC00477Q96M19 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC00477Q96M19 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
LINC00477Q96M19 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
LINC00477Q96M19 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00477Q96M19 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00477Q96M19 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC14.02□□□□□ -0.16
LINC00477Q96M19 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00477Q96M19 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
LINC00477Q96M19 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00477Q96M19 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.02□□□□□ -0.16
LINC00477Q96M19 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
LINC00477Q96M19 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LINC00477Q96M19 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
LINC00477Q96M19 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.02□□□□□ -0.16
LINC00477Q96M19 KRT8P32-201ENST00000512863 1461 ntBASIC14.02□□□□□ -0.16
LINC00477Q96M19 AC112777.1-201ENST00000540175 1423 ntBASIC14.02□□□□□ -0.16
LINC00477Q96M19 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
LINC00477Q96M19 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms