Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ERCC4Q92889 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ERCC4Q92889 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.23■□□□□ 0.99
ERCC4Q92889 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ERCC4Q92889 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.23■□□□□ 0.99
ERCC4Q92889 AC026366.1-201ENST00000488803 879 ntBASIC21.23■□□□□ 0.99
ERCC4Q92889 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.23■□□□□ 0.99
ERCC4Q92889 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
ERCC4Q92889 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.23■□□□□ 0.99
ERCC4Q92889 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ERCC4Q92889 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.23■□□□□ 0.99
ERCC4Q92889 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.23■□□□□ 0.99
ERCC4Q92889 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
ERCC4Q92889 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
ERCC4Q92889 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.23■□□□□ 0.99
ERCC4Q92889 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.23■□□□□ 0.99
ERCC4Q92889 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
ERCC4Q92889 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
ERCC4Q92889 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ERCC4Q92889 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 BCL2-203ENST00000589955 5011 ntBASIC21.22■□□□□ 0.99
ERCC4Q92889 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.22■□□□□ 0.99
ERCC4Q92889 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.22■□□□□ 0.99
ERCC4Q92889 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.22■□□□□ 0.99
ERCC4Q92889 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 AC004264.1-201ENST00000608354 794 ntBASIC21.22■□□□□ 0.99
ERCC4Q92889 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
ERCC4Q92889 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ERCC4Q92889 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.22■□□□□ 0.99
ERCC4Q92889 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.22■□□□□ 0.99
ERCC4Q92889 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.21■□□□□ 0.99
ERCC4Q92889 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
ERCC4Q92889 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
ERCC4Q92889 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.21■□□□□ 0.99
ERCC4Q92889 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
ERCC4Q92889 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.21■□□□□ 0.99
ERCC4Q92889 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.21■□□□□ 0.99
ERCC4Q92889 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.21■□□□□ 0.99
ERCC4Q92889 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
ERCC4Q92889 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 KRT17P3-201ENST00000420566 1262 ntBASIC21.21■□□□□ 0.99
ERCC4Q92889 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.21■□□□□ 0.99
ERCC4Q92889 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.21■□□□□ 0.99
ERCC4Q92889 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.21■□□□□ 0.99
ERCC4Q92889 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.21■□□□□ 0.99
ERCC4Q92889 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.21■□□□□ 0.99
ERCC4Q92889 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.21■□□□□ 0.99
ERCC4Q92889 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
ERCC4Q92889 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.21■□□□□ 0.99
ERCC4Q92889 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 RCC2P6-201ENST00000526625 1557 ntBASIC21.21■□□□□ 0.99
ERCC4Q92889 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
ERCC4Q92889 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
ERCC4Q92889 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
ERCC4Q92889 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
ERCC4Q92889 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ERCC4Q92889 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms