Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4AQ8WYN0 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 NOC2LP2-201ENST00000407594 1944 ntBASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 HTR7P1-201ENST00000538670 1336 ntBASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4AQ8WYN0 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 PRSS44-201ENST00000515154 1146 ntBASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG4AQ8WYN0 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 AC067852.2-201ENST00000590513 2313 ntBASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 AL357033.4-201ENST00000617703 1807 ntBASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 AP002982.1-201ENST00000492365 877 ntBASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 MIR4651-201ENST00000582622 73 ntBASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 KRT8P3-201ENST00000519669 1449 ntBASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG4AQ8WYN0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.7
ATG4AQ8WYN0 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.7
ATG4AQ8WYN0 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATG4AQ8WYN0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms