Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 AC079598.2-202ENST00000546624 1451 ntBASIC16.75■□□□□ 0.27
VSX1Q9NZR4 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 AC073592.3-201ENST00000625118 1834 ntBASIC16.75■□□□□ 0.27
VSX1Q9NZR4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VSX1Q9NZR4 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 FAM207BP-201ENST00000447172 505 ntBASIC16.74■□□□□ 0.27
VSX1Q9NZR4 B3GAT3P1-201ENST00000471720 806 ntBASIC16.74■□□□□ 0.27
VSX1Q9NZR4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 FAM197Y4-202ENST00000622692 608 ntBASIC16.74■□□□□ 0.27
VSX1Q9NZR4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.74■□□□□ 0.27
VSX1Q9NZR4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VSX1Q9NZR4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 AC135050.7-201ENST00000624508 2218 ntBASIC16.73■□□□□ 0.27
VSX1Q9NZR4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 AL135905.2-201ENST00000584934 1404 ntBASIC16.73■□□□□ 0.27
VSX1Q9NZR4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 AC011506.1-201ENST00000474329 610 ntBASIC16.73■□□□□ 0.27
VSX1Q9NZR4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 MIR6786-201ENST00000616843 113 ntBASIC16.73■□□□□ 0.27
VSX1Q9NZR4 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VSX1Q9NZR4 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms