Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 TNXA-203ENST00000507684 2038 ntBASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD1Q96NR3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 MCCD1P1-208ENST00000445732 328 ntBASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.66■□□□□ 0.42
PTCHD1Q96NR3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 AC004408.2-201ENST00000623613 2777 ntBASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 AC141257.4-201ENST00000634557 245 ntBASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 AC136944.6-201ENST00000634818 245 ntBASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 RCC2P3-201ENST00000418112 1537 ntBASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.65■□□□□ 0.42
PTCHD1Q96NR3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
PTCHD1Q96NR3 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
PTCHD1Q96NR3 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PTCHD1Q96NR3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 BX664615.1-201ENST00000443558 458 ntBASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
PTCHD1Q96NR3 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms