Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 AC008687.6-201ENST00000596318 630 ntBASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PPP4R4Q6NUP7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 IRX1P1-201ENST00000438849 1838 ntBASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 AC128676.1-201ENST00000454392 318 ntBASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PPP4R4Q6NUP7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
PPP4R4Q6NUP7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PPP4R4Q6NUP7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
PPP4R4Q6NUP7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
PPP4R4Q6NUP7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PPP4R4Q6NUP7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
PPP4R4Q6NUP7 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 ITM2C-210ENST00000620962 501 ntBASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 AC073648.6-201ENST00000641589 218 ntBASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 ZNF815P-204ENST00000434898 1737 ntBASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PPP4R4Q6NUP7 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PPP4R4Q6NUP7 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms