Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.41■□□□□ 0.54
PKNOX1P55347 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PKNOX1P55347 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
PKNOX1P55347 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
PKNOX1P55347 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.4■□□□□ 0.54
PKNOX1P55347 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.4■□□□□ 0.54
PKNOX1P55347 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.4■□□□□ 0.54
PKNOX1P55347 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.4■□□□□ 0.54
PKNOX1P55347 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 AC239809.2-201ENST00000415381 517 ntBASIC18.4■□□□□ 0.54
PKNOX1P55347 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.4■□□□□ 0.54
PKNOX1P55347 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
PKNOX1P55347 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.4■□□□□ 0.54
PKNOX1P55347 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.4■□□□□ 0.54
PKNOX1P55347 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PKNOX1P55347 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
PKNOX1P55347 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
PKNOX1P55347 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PKNOX1P55347 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
PKNOX1P55347 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PKNOX1P55347 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
PKNOX1P55347 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.39■□□□□ 0.54
PKNOX1P55347 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.39■□□□□ 0.53
PKNOX1P55347 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PKNOX1P55347 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.39■□□□□ 0.53
PKNOX1P55347 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 KRASP1-201ENST00000407852 552 ntBASIC18.39■□□□□ 0.53
PKNOX1P55347 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.39■□□□□ 0.53
PKNOX1P55347 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PKNOX1P55347 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.39■□□□□ 0.53
PKNOX1P55347 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.39■□□□□ 0.53
PKNOX1P55347 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.39■□□□□ 0.53
PKNOX1P55347 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.39■□□□□ 0.53
PKNOX1P55347 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.39■□□□□ 0.53
PKNOX1P55347 AC233263.1-201ENST00000578059 224 ntBASIC18.39■□□□□ 0.53
PKNOX1P55347 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.39■□□□□ 0.53
PKNOX1P55347 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
PKNOX1P55347 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
PKNOX1P55347 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
PKNOX1P55347 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.39■□□□□ 0.53
PKNOX1P55347 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
PKNOX1P55347 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PKNOX1P55347 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.38■□□□□ 0.53
PKNOX1P55347 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
PKNOX1P55347 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PKNOX1P55347 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 AC067852.2-201ENST00000590513 2313 ntBASIC18.38■□□□□ 0.53
PKNOX1P55347 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.38■□□□□ 0.53
PKNOX1P55347 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.38■□□□□ 0.53
PKNOX1P55347 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.38■□□□□ 0.53
PKNOX1P55347 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.38■□□□□ 0.53
PKNOX1P55347 Z85996.1-201ENST00000494644 937 ntBASIC18.38■□□□□ 0.53
PKNOX1P55347 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.38■□□□□ 0.53
PKNOX1P55347 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.38■□□□□ 0.53
PKNOX1P55347 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.38■□□□□ 0.53
PKNOX1P55347 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PKNOX1P55347 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.38■□□□□ 0.53
PKNOX1P55347 AL023875.1-201ENST00000640777 796 ntBASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms