Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDNEP1O95476 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CTDNEP1O95476 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.74■■□□□ 1.07
CTDNEP1O95476 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CTDNEP1O95476 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 UNC93B2-201ENST00000285383 730 ntBASIC21.74■■□□□ 1.07
CTDNEP1O95476 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.74■■□□□ 1.07
CTDNEP1O95476 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CTDNEP1O95476 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.74■■□□□ 1.07
CTDNEP1O95476 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.74■■□□□ 1.07
CTDNEP1O95476 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CTDNEP1O95476 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 AL354751.1-201ENST00000412768 1863 ntBASIC21.73■■□□□ 1.07
CTDNEP1O95476 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 MIR564-202ENST00000385049 94 ntBASIC21.73■■□□□ 1.07
CTDNEP1O95476 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.73■■□□□ 1.07
CTDNEP1O95476 AP006294.2-201ENST00000641667 209 ntBASIC21.73■■□□□ 1.07
CTDNEP1O95476 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.73■■□□□ 1.07
CTDNEP1O95476 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CTDNEP1O95476 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.72■■□□□ 1.07
CTDNEP1O95476 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDNEP1O95476 KRT8P9-201ENST00000558927 1449 ntBASIC21.72■■□□□ 1.07
CTDNEP1O95476 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.72■■□□□ 1.07
CTDNEP1O95476 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CTDNEP1O95476 MIR4497-201ENST00000583208 89 ntBASIC21.72■■□□□ 1.07
CTDNEP1O95476 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.72■■□□□ 1.07
CTDNEP1O95476 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CTDNEP1O95476 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTDNEP1O95476 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.72■■□□□ 1.07
CTDNEP1O95476 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 KRT18P41-201ENST00000518924 1277 ntBASIC21.71■■□□□ 1.07
CTDNEP1O95476 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.71■■□□□ 1.07
CTDNEP1O95476 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDNEP1O95476 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms